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Is there a way to have relative axis scales?
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Grapher allows each axis to be scaled separately using axis minimum, maximum, and length values. There is not a scale setting that can be set that controls how many units occur over a given page length.  However, we have created a script that will do this. 

  1. Download the script attached to this message. 
  2. Open your GRF, GPJ, or GRT file. 
  3. Click the Edit | Script Recorder | Run command. 
  4. Select the BAS file and click Open.  The script automatically scales the Y axis to match the X Axis.
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